Bioconductor Ncbi geo

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NCBI GEO

updated 5.0 years ago by SAn • 0 • written 9.8 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

7.0 years ago cschot3 • 0

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limma differential gene expression ncbi geo affymetrix microarrays

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 8.0 years ago by Matthew McCall ▴ 830 • written 8.0 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 8.8 years ago by Gordon Smyth 53k • written 8.8 years ago by kevin.m.hao ▴ 10

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5.9k

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geoquery ncbi geo geo data

9.0 years ago fongchunchan ▴ 30

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Comment: Getting a large intercept with DESeq2 by Denise • 0

Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …

Comment: Error installing Seqinfo by shepherl 4.2k

Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week

Comment: APAlyzer by shepherl 4.2k

We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

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Answer: replace cat with message in glmTreat when lfc = 0

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

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